Subtitle:

Sprawozdania Archeologiczne 62 (2010)

Publisher:

Instytut Archeologii i Etnologii Polskiej Akademii Nauk

Place of publishing:

Kraków

Description:

ill. ; 25 cm

Type of object:

Journal/Article

Abstract:

The growing interest in mitochondrial DNA (mtDNA) analysis is due to its inheritance manner, circular DNA stability, high copy number per cell and mutational rate. These features give possibility to study mtDNA isolated from modern humans as well as from ancient samples. What is more, analysis of mtDNA from present populations enables to conclude about their history. Mitochondrial DNA variation level indicates, if for example, demic expansion structured today genetic composition. Thanks to modern mtDNA analysis migrations direction and other demographic events can be dated back without problematic extraction and analysis of ancient DNA. Not only the existence of well defined, continental specific mtDNA clades was shown, but also group specific lineages were revealed. Molecular methods enabled discrimination between related mtDNAs and detailed phylogenetic tree of female lineages was drawn. Analysis of mtDNA supported a hypothesis about modern Homo sapiens origin in Africa, and led light on migratory routes in Asia, Europe and the Americas

References:

Abu-Amero K. K., Lrruga J. M., Cabrera V. M. and González M. 2008. Mitochondrial DNA structure in the Arabian Peninsula. BMC Evolutionary Biology 8, 45
Alfonso-Sánchez M. A., Cardoso S., Martínez-Bouzas C., Peńa J. A., Herrera RJ., Castro A., Fernández-Fernández I. and de Pancorbo M. M. 2008. Mitochondrial DNA haplogroup diversity in Basques: a reassessment based on HV I and HV II polymorphisms. American Journal of Human Biology 20,154-164
Alves-Silva J., da Silva Santos M., Guimarăes P. E. M„ Ferreira A. C. S., Bandelt H.-J., Pena S. D. J. and Prado V. F., 2000. The ancestry of Brazilian mtDNA lineages. American Journal of Human Genetics 67, 444-461
Anderson S., Bankier A. T., Barrell G., de Bruijn M. H. L., Coulson A. R., Drouin J., Eperon I. C., Nierlich D. P., Roe B. A., Sanger F., Schreier P. H., Smith A. J. H„ Staden R. and Young I. G., 1981. Sequence and organization oft he human mitochondrial genome. Nature 290, 457-465
Behar D. M., Metspalu E., Kivisild T., Achilli A., Hadid Y., Tzur S., Pereira L., Amorim A., Quintana- Murci L., Majamaa K., Herrnstadt C., Howell N,, Balanovsky O., Kutuev I., Pshenichnov A., Gurwitz D., Bonne-Tamir B., Torroni A., Villems R. and Skorecki K. 2006. The matrilineal ancestry of Ashkenazi Jewry: portrait of a recent founder event. American Journal of Human Genetics 78, 487-497
Bonatto S. L., Salzano F. M. 1997. Diversity and age of the four major mtDNA haplogroups, and their implications for the peopling of the New World. American Journal of Human Genetics 61, 1413-1423
Bortolini M. C., Salzano F. M., Zago M. A., Da Silva W. A. and Weimer T. de A. 1997. Genetic variability in two Brazilian ethnic groups: a comparison of mitochondria and protein data. American Journal of Physical Anthropology 103,147-156
Brandstätter A., Egyed B., Zimmermann B., Tordai A., Padar Z. and Parson W. 2008. Mitochondrial DNA control region variation on Ashkenazi Jews from Hungary. Forensic Science International. Genetics 2, e4-e6
Brandstätter A., Zimmermann B., Wagner J., Göbel T., Röck A. W., Salas A., Carracedo A. and Parson W. 2008. Timing and deciphering mitochondrial DNA macro-haplogroup Ro variability in Central Europe and Middle East. BMC Evolutionary Biology 8,191
Brown W. M. 1980. Polymorphism in mitochondrial DNA of humans as revealed by restriction endonuclease analysis. Proceedings of the National Academy of Sciences of the United States of America 77, 3605-3609
Brown W. M., George M. Jr and Wilson A. C. 1979. Rapid evolution of animal mitochondrial DNA. Proceedings of the National Academy of Sciences of the United States of America 76,1967-1971
Cann R. L., Stoneking M. and Wilson A. C. 1987. Mitochondrial DNA and human evolution. Nature 325, 31-36
Cano R. J., Poinar H. N. and Poinar G. O. Jr 1992, Isolation and partial characterisation of DNA from the bee Proplebeia dominicana (Apidae: Hymenoptera) in 25-40 million year old amber. Medical Science Research 20, 249-251
Caramelli D., Milani L., Vai S., Modi A., Pecchioli E., Girardi M., Pilli E., Lari M., Lippi B., Ronchitelli A., Mallegni F., Casoli A., Bertorelle G. and Barbujani G. 2008. A 28,000 years old Cro-Magnon mtDNA sequence differs from all potentially contaminating modern sequences. PloS one 3, e2700
Cavalli-Sforza L.L., Menozzi P. and Piazza A. 1994. The history and geography of human genes. Princeton, Princeton Univeristy Press
Chaubey G., Karmin M., Metspalu E., Metspalu M., Selvi-Rani D., Singh V. K., Parik J., Solnik A., Naidu B. P., Kumar A., Adarsh N., Mallick C. B., Trivedi B., Prakash S., Reddy R., Shukla P., Bhagat S., Verma S., Vasnik S., Khan I., Barwa A., Sahoo D., Sharma A., Rashid M., Chandra V., Reddy A. G., Torroni A., Foley R. A., Thangaraj K., Singh L., Kivisild T. and Villems R. 2008. Phylogeography of mtDNA haplogroup R7 in the Indian peninsula. BCM Evolutionary Biology 8, 227
Chen Y.-S., Torroni A., Excoffier L., Santachiara-Benerecetti A. S. and Wallace D. C. 1995, Analysis of mtDNA variation in African population reveals the most ancient of all human continent- specific haplogroups. American Journal of Human Genetics 57,133-149
Cooper A. 1997. Reply to Stoneking: ancient DNA - how do you really know when you have it? American Journal of Human Genetics 60, 1001-1002
Dubut V., Chollet L., Murail P., Cartault F., Béraud-Colomb E., Serre M. and Mogentale-Profizi N., 2004, mtDNA polymorphisms in five French groups: importance of regional sampling. European Journal of Human Genetics 12, 293-300
Elson J. L., Andrews R. M., Chinnery P. F., Lightowlers R. N., Turnbull D. M. and Howell N. 2001. Analysis of European mtDNAs for recombination. American Journal of Human Genetics 68, 145-153
Excoffier L. and Schneider S. 2000. The demography of human populations inferred from pattern of mitochondrial DNA diversity. In C. Renfrew and K. Boyle (eds.), Archaeogenetics: DNA and the population prehistory of Europe. Cambridge, 101-108
Forster P., Harding R., Torroni A. and Bandelt H.-J. 1996. Origin and evolution of Native American mtDNA variation: a reappraisal. American Journal of Human Genetics 59, 935-945
Gilbert M. 'I'. P., Bandelt H. J., Hofreiter M. and Barnes I., 2005, Assessing ancient DNA studies. Trends in Ecology and Evolution 20, 541-544
Greenberg B. D., Newbold J. E. and Sugino A. 1983. Intraspecific nucleotide sequence variability surrounding the origin of replication in human mitochondrial DNA. Gene 21, 33-49
Grzybowski T., Malyarchuk B. A., Derenko M.V., Perkova M.A., Bednarek J. and Woźniak M. 2007. Complex interactions oft he European and Western Slavic populations with other European groups as revealed by mitochondrial DNA analysis. Forensic Science International. Genetics 1,141-147
Handt O., Krings M., Ward R. H. and Pääbo S. 1996. The retrieval of ancient human DNA sequences. American Journal of Human Genetics 59, 368-376
Herrnstadt C., Elson J. L., Fahy E., Preston G., Turnbull D. M., Anderson C., Gosh S. S., Olefsky J. M., Beal M. F., Davis R. E. and Howell N. 2002. Reduced-median-network analysis of complete mitochondrial DNA soding-region sequences fort he major African, Asian, and European haplogroups. American Journal of Human Genetics 70, 1152-1171
Herzberg M., Mickleson K. N. P., Serjeantson S. W., Prior J. F. and Trent R. J. 1989. An Asian-specific 9-bp deletion of mitochondrial DNA is frequently found in Polynesians. American Journal of Human Genetics 44, 504-510
Horai S., Kondo R., Nakagawa-Hattori Y., Hayashi S., Sonoda S. and Tajima K. 1993. Peopling of the Americas, founded by four major lineages of mitochondrial DNA. Molecular Biology and Evolution 10, 23-47
Howell N., Elson J. L., Howell C. and Turnbull D. M. 2007. Relative rates of evolution in the coding and control regions of African mtDNAs. Molecular Biology and Evolution 24, 2213- 2221
Ingman M., Kaessmann H., Pääbo S. and Gyllensten U. 2000. Mitochondrial genome variation and the origin of modern humans. Nature 408, 708-713
Kaestle F. A. and Horsburgh K. A. 2002. Ancient DNA in anthropology; methods, applications, and ethics. Yearbook of Physical Anthropology 45, 92-130
Kidd K. K., Kidd J. R., Pakstis A. J., Bonne-Tamir B. and Grigorenko E. 2000. Nuclear genetic variation of European population in a global context. In C. Renfrew C and K. Boyle (eds.), Archaeogenetics: DNA and the population prehistory of Europe. Cambridge, 109-117
Kolman C. J., Sambuughin N. and Bermingham E. 1996. Mitochondrial DNA analysis of Mongolian populations and implications fort he origin of New World founders. Genetics 142, 1321-1334
Kumar S., Ravuri R. R., Koneru P., Urade B. P., Sakar B. N., Chandrasekar A. and Rao V. R. 2009. Reconstructing Indian-Australian phylogenetic link. BMC Evolutionary Biology 9,173
Lander N., Rojas M. G., Chiurillo M. A. and Ramirez J. L. 2008. Haplotype diversity in human mitochondrial DNA hypervariable regions I-III in the city of Caracac (Venezuela). Forensic Science International. Genetics 2, e61-e64
Lewis C. M., Tito R. Y., Lizárraga B. and Stone A. C. 2004. Land, language, and loci: mtDNA in Native Americans and the genetic history of Peru. American Journal of Physical Anthropology 127, 351-360
Loogväli E.-L., Roostalu U., Malyarchuk B. A., Derenko M. V., Kivisild T., Metspalu E., Tambets K., Reidla M., Tolk H.-V., Parik J., Pennarun E., Laos S„ Lunkina A., Golubenko M., Brać L., PeričićM., Balanovsky O. P., Gusar V., Khusnutdinova E. K., Stepanov V., Puzyrev V., Rudan P., Balanovska E. V., Grechanina E., Richard C., Moisan J.-P., Chaventré A., Anagnou N. P., Pappa K. I., Michalodimitrakis E. N., Claustres M., Gölge M., Mikerezi I., Usanga E. and Villems R., 2004, Disuniting uniformity: a pied cladistic canvas of mtDNA haplogroup H in Eurasia. Molecular Biology and Evolution 21, 2012-2021
Maca-Meyer N., González A. M., Larruga J. M., Flores C. and Cabrera V. M. 2001. Major genomic mitochondrial lineages delineate early human expansions. BMC Genetics 2, 13
Macaulay V., Richards M., Hickey E., Vega E., Cruciani F., Guida V., Scozzari R., Bonné-Tamir B., Sykes B. and Torroni A. 1999. The emerging tree west Eurasian mtDNAs: a synthesis of control-region sequences and RFLPs. American Journal of Human Genetics 64, 232-249
Malmström H., Storĺ J., Dalén L., Holmlund G. and Götherström A. 2005. Extensive human DNA contamination in extracts from ancien dog bones and teeth. Molecular Biology and Evolution 22, 2040-2047
Malyarchuk B. A. 2001. Differentiation of Slavs and their genetic position among Eurasian people from data on mitochondrial DNA diversity. Genetika 37, 1705-1712
Malyarchuk B. A., Derenko M., Perkova M., Grzybowski T., Vanecek T. and Lazur J. 2008. Reconstructing the phytogeny of African mitochondrial DNA lineages in Slavs. European Journal of Human Genetics 16, 1091-1096
Malyarchuk B. A., Derenko M., Grzybowski T., Lunkina A., Czarny J., Rychkov S., Morozowa I., Denisova G. and Miścicka-Śliwka D. 2004. Differentiation of mitochondrial DNA and Y chromosomes in Russian population. Human Biology 76, 877-900
Malyarchuk B., Grzybowski T., Derenko M., Perkova M., Vanecek T., Lazur J., Gomolcak P. and Tsybovsky I. 2008. Mitochondrial DNA phytogeny in Eastern and Western Slavs. Molecular Biology and Evolution 25,1651-1658
Malyarchuk B. A., Grzybowski T., Derenko M. V., Czarny J. and Miścicka-Sliwka D. 2006. Mitochondrial DNA diversity in the Polish Roma. Annals of Human Genetics 70, 195-206
Malyarchuk B. A., Grzybowski T., Derenko M. V., Czarny J., Drobnic K. and Miścicka-Sliwka D. 2003. Mitochondrial DNA variability in Bosnians and Slovenians. Annals of Human Genetics 67, 412-425
Malyarchuk B. A., Grzybowski T., Derenko M. V., Czarny J., Woźniak M. and Miścicka-Sliwka D. 2002. Mitochondrial DNA variability in Poles and Russians. Ann Hum Genet 66, 261-283
Malyarchuk B. A., Perkova M. A. and Derenko M. V. 2008. Origin oft he Mongoloid component in the mitochondrial gene pool of Slavs. Genetika 44, 401-406
Malyarchuk B. A., Perkova M. A., Derenko M. V., Vanecek T., Lazur J. and Gomolcak P. 2008. Mitochondrial DNA variability in Slovaks, with application tot he Roma origin. Annals of Human Genetics 72, 228-240
Malyarchuk B. A., Vanecek T., Perkova M. A. and Derenko M. V., Sip M 2006 Mitochondrial DNA variability in the Czech population, with application to the ethnic history of Slavs. Human Biology 78, 681-696
Melton T., Peterson R., Redd A. J., Saha N., Sofro A. S. M., Martinson J. and Stoneking M. 1995. Polynesian genetic affinities with southeast Asian populations as identified by mtDNA analysis. American Journal of Human Genetics 57, 403-414
Menozzi P. A., Piazza A. and Cavalli-Sforza L. L. 1978. Synthenic maps of human gene frequencies in Europe. Science 210, 786-792
Mourier T., Hansen A. J., Willerslev E. and Arctander P. 2001. The human genome project reveals a continuous transfer of evenly distributed large mitochondrial fragments to the nucleus. Molecular Biology and Evolution 18, 1833-1837
Nicholson G. J., Tomiuk J., Czarnetzki A., Bachmann L. and Pusch C. M. 2002. Detection of bone glue treatment as a major source of contamination in ancient DNA analyses. American Journal of Physical Anthropology 118, 117-120
Oven M. and Kavser M. 2009. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Human Mutation 30, e386-e394
Pruvost M., Schwartz R., Correia V. B., Champlot S., Braguier S., Morel N., Fernandez-Jalvo Y., Grange T. and Geigl E.-M. 2007. Freshly excavated fossil bones are best for amplification of ancient DNA. Proceedings of the National Academy of Sciences of the United States of Ame¬rica 104. 739-744
Pusch C. M., Broghammer M. and Blin N. 2003. Molecular phvlogenetics employing modern and ancient DNA. Journal of Applied Genetics 44, 269-290
Reidla M., Kivisild T., Metspalu E., Kaldma K., Tambets K., Tolk H.-V., Parik J., Loogväli E.-L., Derenko M., Malyarchuk B., Bermisheva M., Zhadanov S., Pennarun E., Gubina M., Golubenko M., Damba L., Fedorova S., Gusar V., Grechanina E., Mikerezi I., Moisan J.-P., Chaventré A., Khusnutdinova E., Osipova L., Stepanov V., Voevoda M., Achilli A., Rengo C., Rickards O., De Stefano G. F., Papiha S., Beckman L., Janicijevic B., Rudan P., Anagnou N., Michalodimitrakis E., Kozieł S., Usanga E., Geberhiwot T., Herrnstadt C., Howell N., Torroni A. and Willems R. 2003. Origin and diffusion of mtDNA haplogroup X. American Journal of Human Genetics 73, 1178-1190
Renfrew C. 2000. Archaeogenetics: towards a population prehistory of Europe. In C. Renfrew and K. Boyle (eds.), Archaeogenetics: DNA and the population prehistory of Europe. Cambridge, 3 - 11
Richards M., Côte-Real H., Forster P., Macaulay V., Wilkinson-Herbots H., Demaine A., Papiha S., Hedges R., Bandelt H. J. and Sykes B. 1996. Paleolithic and Neolithic lineages in the European mitochondrial gene pool. American Journal of Human Genetics 59, 185-203
Shields G. F., Schmiechen A M., Frazier B. L., Redd A., Voevoda M. I., Reed J. K. and Ward R. H. 1993. mtDNA sequences suggest a recent evolutionary divergence for Beringian and Northern North American populations. American Journal of Human Genetics 53, 549-562
Salamon M, Tuross N., Arensburg B. and Weiner S. 2005. Relatively well preserved DNA in the crystal aggregates of fossil bones. Proceedings of the National Academy of Sciences of the United States of America 102, 13783-13788
Sampietro M. L., Gilbert M. T., Lao O., Caramelli D., Lari M., Bertranpetit J. and Lalueza-Fox C. 2006. Tracking down human contamination in ancient human teeth. Molecular Biology and Evolution 23, 1801-1807
Sokolova V. A., Vasilyev V, B., Delefosse T., Hänni C., Rochet D. and Godinot C. 2002. A Russian family of Slavic origin carrying mitochondrial DNA with a 9-bp deletion in region V and a long C-stretch in D-loop. Mitochondrion 1, 479-483
Soodyall H., Vigilant L., Hill A. V., Stoneking M. and Jenkins T. 1996. mtDNA control-region sequence variation suggest multiple independent origins of an "Asian-specific" 9-bp deletion in sub-Saharan Africans. American Journal of Human Genetics 58, 595-608
Sykes B. and Renfrew C. 2000. Concepts in molecular genetics. In C. Renfrew and K. Boyle (eds.), Archaeogenetics: DNA and the population prehistory of Europe. Cambridge, 13-22
Torroni A., Achilli A., Macaulay V., Richards M. and Bandelt H.-J. 2006. Harvesting the fruit oft he human mtDNA tree. Trends in Genetics 22, 339-345
Torroni A., Huoponen K., Francalacci P., Petrozzi M., Morelli L., Scozzari R., Obinu D., Savantaus M.-L. and Wallace D. C. 1996. Classification of European mtDNAs from as analysis of three European populations. Genetics 144, 1835-1850
Torroni A., Lott M. T., Cabell M. F., Chen Y.-S., Lavergne L. and Wallace D. C. 1994. mtDNA and the origin of Caucasians: identification of ancient Caucasian-specific haplogroups, one oft he which is prone to a recurrent somatic duplication in the D-loop region. American Journal Human Genetics 55, 760-776
Torroni A., Petrozzi M., Santolamazza P., Sellitto D., Cruciani F. and Scozzari R. 1995. About the ,Asian”-specific 9-bp deletion of mtDNA. American Journal Human Genetics 57, 507-508
Torroni A., Schurr T. G., Cabell M. F., Brown M. D., Neel J. V., Larsen M., Smith D. G., Vullo C. M. and Wallace D. C. 1993. Asian affinities and continental radiation of the four founding Native American mtDNAs. American Journal Human Genetics 53,563-590
Torroni A., Schurr T. G., Yang C.-C., Szathmary E. J. E., Williams R. C., Schanfield M. S., Troup G. A., Knowler W. C., Lawrence D. N., Weiss K. M. and Wallace D. C. 1992. Native American mito¬chondrial DNA analysis indicates that the Amerind and the Nadene populations were found¬ed by two independent migrations. Genetics 130,153-162
Torroni A., Sukernik R. I., Schurr T. G., Starikovskaya Y. B., Cabell M. F., Crawford M. H., Comuzzie A. G. and Wallace D. C. 1993. mtDNA variation of aboriginal Siberians reveals distinct ge¬netic affinities with Native Americans. American Journal Human Genetics 53, 591-608
Umetsu K. and Yuasa I. 2005. Recent progress in mitochondrial DNA analysis. Legal Medicine (Tokyo) 7, 259-262
Wallace D. C., Ye, J. H., Neckelmann S. N, Singh G., Webster K. A. and Greenberg B. D. 1987. Sequence analysis of. cDNAs from the human and bovine ATP synthase ß-subunit: mitochondrial DNA genes sustain seventeen times more mutations. Current Genetics 12, 81-90
Willerslev E. and Cooper A. 2005. Ancient DNA. Proceedings. Biological Sciences 272, 3-16
Ward R. and Stringer C. 1997. A molecular handle on the Neanderthals. Nature 388, 225-226
Woodward S. R., Weyand N. J. and Bunnell M. 1994. DNA sequence from Cretaceous period bone fragments. Science 266, 1229-1232

Relation:

Sprawozdania Archeologiczne

Volume:

62

Start page:

9

End page:

33

Detailed Resource Type:

Article

Format:

application/pdf

Resource Identifier:

oai:rcin.org.pl:55435 ; 0081-3834

Source:

IAiE PAN, call no. P 244 ; IAiE PAN, call no. P 245 ; IAiE PAN, call no. P 243 ; click here to follow the link

Language:

eng

Rights:

Rights Reserved - Restricted Access

Terms of use:

Copyright-protected material. Access only on terminals at the Institute of Archaeology and Ethnology of the Polish Academy of Sciences, may be used within the limits of statutory user freedoms.

Digitizing institution:

Institute of Archaeology and Ethnology of the Polish Academy of Sciences

Original in:

Library of the Institute of Archaeology and Ethnology of the Polish Academy of Sciences

Projects co-financed by:

Programme Innovative Economy, 2010-2014, Priority Axis 2. R&D infrastructure ; European Union. European Regional Development Fund

Access:

Closed